GBA-BI/bioos-mcp-server

3.6

Certified

A Model Context Protocol (MCP) based tool and prompt server for Bio-OS that provides workflow management and Docker image building capabilities.

Tools

Functions exposed to the LLM to take actions

submit_workflow

Submit Bio-OS workflow with parameters like Access Key, Secret Key, workspace name, workflow name, and input JSON file path.

import_workflow

Upload WDL workflow to Bio-OS system with parameters like Access Key, Secret Key, workspace name, workflow name, workflow source, and workflow description.

validate_wdl

Validate WDL workflow script with the WDL file path.

generate_inputs

Generate WDL input file template with the WDL file path.

build_docker_image

Build Docker image with parameters like registry, namespace name, repository name, version tag, and source path.

check_build_status

Check Docker image build status with the build task ID.

Prompts

Interactive templates invoked by user choice

No prompts

Resources

Contextual data attached and managed by the client

No resources

Related MCP Servers

View all developer_tools servers →

context7

4.9

by upstash

Context7 MCP provides up-to-date, version-specific documentation and code examples directly into your prompt, enhancing the capabilities of LLMs by ensuring they use the latest information.

developer_tools

claude-task-master

4.7

by eyaltoledano

Task Master is a task management system for AI-driven development with Claude, designed to work seamlessly with Cursor AI.

ai_chatbot

mindsdb

4.6

by mindsdb

MindsDB is an open-source server that enables seamless interaction with large-scale federated data using the Model Context Protocol (MCP).

databases

terraform-mcp-server

4.5

by hashicorp

The Terraform MCP Server is a Model Context Protocol server that integrates with Terraform Registry APIs for advanced automation in Infrastructure as Code development.

cloud_platforms

mcp-shrimp-task-manager

4.5

by cjo4m06

MCP Shrimp Task Manager is an intelligent task management system based on Model Context Protocol (MCP), designed to enhance programming workflows for AI Agents.

os_automation

mcp-server-chart

4.5

by antvis

A Model Context Protocol server for generating charts using AntV.

research_and_data

n8n-workflow-builder

4.5

by makafeli

The n8n Workflow Builder MCP Server is designed to manage n8n workflows, providing tools for workflow management and execution management.

developer_tools

evm-mcp-server

4.5

by mcpdotdirect

A comprehensive Model Context Protocol (MCP) server that provides blockchain services across multiple EVM-compatible networks.

finance

mcp-server

4.5

by e2b-dev

The E2B MCP Server enables code interpreting capabilities for the Claude Desktop app using the E2B Sandbox.

developer_tools

wcgw

4.5

by rusiaaman

wcgw is an MCP server with tightly integrated shell and code editing tools, designed to empower chat applications like Claude to code, build, and run on your local machine.

developer_tools

mcp-installer

4.4

by anaisbetts

mcp-installer is a server that facilitates the installation of other MCP servers using Claude.

developer_tools

graphlit-mcp-server

4.4

by graphlit

The Model Context Protocol (MCP) Server for the Graphlit Platform facilitates integration between MCP clients and the Graphlit service, enabling seamless ingestion, search, and retrieval of knowledge across various platforms.

knowledge_and_memory

mcp-sequentialthinking-tools

4.4

by spences10

An adaptation of the MCP Sequential Thinking Server designed to guide tool usage in problem-solving by breaking down complex problems into manageable steps.

developer_tools

mcp-server-tree-sitter

4.4

by wrale

The MCP Tree-sitter Server is a Model Context Protocol server that provides code analysis capabilities using tree-sitter, designed to give AI assistants intelligent access to codebases with appropriate context management.

developer_tools

osp_marketing_tools

4.4

by open-strategy-partners

A comprehensive suite of tools for technical marketing content creation, optimization, and product positioning based on Open Strategy Partners' proven methodologies.

communication

mcp-taskmanager

4.4

by kazuph

Model Context Protocol server for Task Management, enabling Claude Desktop or any MCP client to manage and execute tasks in a queue-based system.

developer_tools

repomix

4.4

by yamadashy

Repomix is a tool that packs your codebase into AI-friendly formats, making it easier to use with AI tools like LLMs.

developer_tools

mcp-svelte-docs

4.3

by spences10

A Model Context Protocol (MCP) server that provides a comprehensive reference guide for Svelte 5, helping LLMs provide accurate guidance when users are working with Svelte.

developer_tools

whois-mcp

4.3

by bharathvaj-ganesan

The Whois MCP server allows AI agents to perform WHOIS lookups to retrieve domain details.

research_and_data

mcp-grafana

4.3

by grafana

A Model Context Protocol (MCP) server for Grafana providing access to your Grafana instance and its ecosystem.

monitoring

mcp-nixos

4.3

by utensils

MCP-NixOS is a Model Context Protocol server designed to provide accurate information about NixOS, Home Manager, and nix-darwin configurations, preventing AI assistants from generating incorrect data.

os_automation

docker-mcp

4.3

by QuantGeekDev

A powerful Model Context Protocol (MCP) server for Docker operations, enabling seamless container and compose stack management through Claude AI.

developer_tools

duckduckgo-mcp-server

4.2

by nickclyde

A Model Context Protocol (MCP) server that provides web search capabilities through DuckDuckGo, with additional features for content fetching and parsing.

browser_automation

mcp-reasoner

4.2

by Jacck

MCP Reasoner is a reasoning implementation for Claude Desktop that enhances complex problem-solving using Beam Search and Monte Carlo Tree Search (MCTS).

developer_tools

mcp-atlassian

4.2

by sooperset

Model Context Protocol (MCP) server for Atlassian products (Confluence and Jira). This integration supports both Confluence & Jira Cloud and Server/Data Center deployments.

cloud_platforms

openapi-mcp-server

4.2

by janwilmake

A Model Context Protocol (MCP) server for Claude/Cursor that enables searching and exploring OpenAPI specifications through oapis.org.

research_and_data

gistpad-mcp

4.2

by lostintangent

GistPad MCP is a server for managing and sharing personal knowledge, daily notes, and reusable prompts via GitHub Gists, integrated with VS Code and GistPad.dev.

knowledge_and_memory