bioos-mcp-server
If you are the rightful owner of bioos-mcp-server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.
A Model Context Protocol (MCP) based tool and prompt server for Bio-OS that provides workflow management and Docker image building capabilities.
The Bio-OS MCP Server is a robust tool designed to facilitate workflow management and Docker image building within the Bio-OS environment. It offers a seamless integration with VSCode through the CLINE extension, allowing users to manage workflows and Docker images efficiently. The server can be deployed locally or in the cloud using Miracle Cloud's IES instance, providing flexibility based on user needs. With features like workflow submission, monitoring, and Docker image management, the Bio-OS MCP Server is an essential tool for developers working in bioinformatics and related fields.
Features
- Workflow Management: Submit and monitor workflows, upload WDL workflows, validate WDL scripts, and generate input file templates.
- Docker Image Management: Build Docker images, check build status, monitor build progress, and retrieve build logs.
Tools
submit_workflow
Submit Bio-OS workflow with parameters like Access Key, Secret Key, workspace name, workflow name, and input JSON file path.
import_workflow
Upload WDL workflow to Bio-OS system with parameters like Access Key, Secret Key, workspace name, workflow name, workflow source, and workflow description.
validate_wdl
Validate WDL workflow script with the WDL file path.
generate_inputs
Generate WDL input file template with the WDL file path.
build_docker_image
Build Docker image with parameters like registry, namespace name, repository name, version tag, and source path.
check_build_status
Check Docker image build status with the build task ID.
