zacsims/PhysiCell-MCP
If you are the rightful owner of PhysiCell-MCP and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to dayong@mcphub.com.
The PhysiCell MCP Server is a tool designed to facilitate interaction with PhysiCell simulations, offering capabilities for project management, simulation configuration, execution, and result analysis.
Tools
Functions exposed to the LLM to take actions
create_project
Create new PhysiCell projects from templates
list_projects
List available sample projects
configure_simulation
Modify simulation parameters (time, domain, etc.)
run_simulation
Compile and run PhysiCell simulations with automatic error fixing
get_simulation_status
Check the current status of a simulation
analyze_results
Analyze simulation outputs (cell counts, positions, velocities)
fix_compilation_issues
Automatically diagnose and fix compilation problems
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client