pymol-mcp

pymol-mcp

3.4
ai_chatbot

If you are the rightful owner of pymol-mcp and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

PyMOL-MCP connects PyMOL to Claude AI through the Model Context Protocol (MCP), enabling Claude to directly interact with and control PyMOL.

PyMOL-MCP is a powerful integration that allows for conversational structural biology, molecular visualization, and analysis through natural language. By connecting PyMOL to Claude AI via the Model Context Protocol (MCP), users can leverage the capabilities of Claude AI to interact with PyMOL in a more intuitive and efficient manner. This integration facilitates two-way communication, enabling users to issue natural language commands to PyMOL, manipulate molecular visualizations, perform structural analyses, and execute Python code directly within PyMOL. The setup involves installing necessary software, configuring Claude Desktop, and installing a PyMOL plugin to establish the connection.

Features

  • Two-way communication: Connect Claude AI to PyMOL through a socket-based server.
  • Intelligent command parsing: Natural language processing for PyMOL commands.
  • Molecular visualization control: Manipulate representations, colors, and views.
  • Structural analysis: Perform measurements, alignments, and other analyses.
  • Code execution: Run arbitrary Python code in PyMOL from Claude.

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