vindhyadatascience/bioclin-mcp
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The Bioclin MCP Server is a Model Context Protocol server that provides comprehensive access to bioinformatics workflow management through the Bioclin API, supporting integration with Claude and other MCP clients.
Tools
Functions exposed to the LLM to take actions
bioclin_login
Login with username/password
bioclin_logout
Logout and clear session
bioclin_validate_token
Validate current token
bioclin_refresh_token
Refresh access token
bioclin_create_user
Create new user
bioclin_create_admin
Create admin user
bioclin_get_users
List all users (admin)
bioclin_get_user_me
Get current user info
bioclin_get_user_context
Get user context with orgs
bioclin_update_user_me
Update current user
bioclin_set_user_admin
Set admin status (admin)
bioclin_set_user_active
Set active status (admin)
bioclin_recover_password
Send recovery email
bioclin_reset_password
Reset password with token
bioclin_delete_user
Delete user (admin)
bioclin_create_org
Create organization
bioclin_get_orgs
List all organizations
bioclin_get_org
Get organization by ID
bioclin_get_user_orgs
Get user's organizations
bioclin_update_active_org
Switch active org
bioclin_add_user_to_org
Add user to org
bioclin_get_roles
Get all roles
bioclin_get_permissions
Get all permissions
bioclin_create_param
Create parameter
bioclin_get_params
List parameters
bioclin_update_param
Update parameter
bioclin_delete_param
Delete parameter
bioclin_create_analysis_type
Create analysis type
bioclin_get_analysis_types
List analysis types
bioclin_update_analysis_type
Update analysis type
bioclin_delete_analysis_type
Delete analysis type
bioclin_create_project
Create project
bioclin_get_projects
List all projects
bioclin_get_user_projects
List user's projects
bioclin_get_project
Get project by ID
bioclin_delete_project
Delete project
bioclin_create_run
Create analysis run
bioclin_get_runs
List all runs
bioclin_get_runs_by_project
List runs by project
bioclin_get_runs_by_org
List runs by organization
bioclin_delete_run
Delete run
bioclin_generate_signed_url
Generate signed URL
bioclin_get_html_report
Get HTML report
bioclin_download_file
Download file
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client