scanpy-mcp
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Scanpy-MCP is a natural language interface for scRNA-Seq analysis using Scanpy through the Model Context Protocol (MCP).
Scanpy-MCP is designed to facilitate single-cell RNA sequencing (scRNA-Seq) analysis by providing a natural language interface that leverages the capabilities of Scanpy through the Model Context Protocol (MCP). This tool is particularly useful for researchers and developers who wish to perform scRNA-Seq analysis without delving into complex coding. By integrating with AI clients, plugins, and agent frameworks that support MCP, Scanpy-MCP allows users to perform a wide range of tasks, from data input and preprocessing to advanced analysis and visualization. The tool is versatile and can be used in various environments, making it accessible to a broad audience. Whether you are a biologist looking to analyze gene expression data or a developer aiming to integrate scRNA-Seq analysis into your application, Scanpy-MCP provides a user-friendly solution.
Features
- IO module for reading and writing scRNA-Seq data.
- Preprocessing capabilities including filtering, quality control, normalization, and scaling.
- Tools for clustering and differential expression analysis.
- Plotting options such as violin plots, heatmaps, and dot plots.
- Integration with AI clients and agent frameworks supporting MCP.