decoupler-mcp
If you are the rightful owner of decoupler-mcp and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.
Natural language interface for scRNA-Seq analysis with decoupler through MCP.
Decoupler-MCP is a model context protocol server designed to facilitate scRNA-Seq analysis using natural language commands. It integrates with the decoupler tool to provide a seamless interface for users to perform complex bioinformatics tasks such as pathway activity inference, transcription factor analysis, and more. The server is compatible with various AI clients, plugins, and agent frameworks that support the MCP, making it a versatile tool for researchers and developers alike. With decoupler-MCP, users can easily read and write scRNA-Seq data, perform clustering and differential expression analysis, and generate visualizations like violin plots and UMAP/TSNE plots. The tool is particularly useful for those who wish to leverage natural language processing to streamline their bioinformatics workflows.
Features
- IO module for reading and writing scRNA-Seq data
- Pathway activity and transcription factor inference
- Tool module for clustering and differential expression analysis
- Plotting module for generating violin and UMAP/TSNE plots
