richard-dnastack/mutnav
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The `mutnav` repository provides a demo MCP server for querying simple somatic mutation data from ICGC-Argo using Claude Code.
mutnav - README
The mutnav repository contains a demo MCP server that can be configured
with Claude Code to query simple somatic mutation data provided by ICGC-Argo.
Installation
Clone the repository and use uv to install the dependencies.
git clone --recursive git@github.com:richard-dnastack/mutnav.git
cd mutnav
uv pip install -r pyproject.toml
Download data
A copy of simple somatic mutations can be found in a DNAstack bucket
(dnastack-bioinformatics):
mkdir data
gcloud storage cp gs://richard_dev/ssm.tsv ssm.tsv data/ssm.tsv
Usage
To integrate the MCP server with the Claude desktop app, edit the desktop configuration app JSON file. On macOS, edit the following file:
/Users/<username>Library/Application\ Support/Claude/claude_desktop_config.json
Add the following entry under mcpServers:
"mutnav": {
"command": "uv",
"args": [
"--directory",
"/Users/richard.deborja/.local/projects/mcp/mutnav",
"run",
"main.py"
]
}
License
MIT