uniprot-mcp-server

QuentinCody/uniprot-mcp-server

3.2

If you are the rightful owner of uniprot-mcp-server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

A comprehensive Model Context Protocol server for UniProt and EBI Proteins APIs, built on Cloudflare Workers with advanced data staging capabilities using Durable Objects and SQLite.

Tools

Functions exposed to the LLM to take actions

uniprot_search

Advanced UniProtKB search with comprehensive filtering and pagination.

uniprot_stream

Bulk download tool for large datasets with automatic staging.

uniprot_entry

Retrieve individual UniProtKB entries by accession.

uniprot_id_mapping

Map IDs between different database systems.

uniprot_blast

Perform BLAST searches against UniProtKB.

proteins_api_details

Detailed protein information from EBI Proteins API.

proteins_api_features

Protein sequence features and annotations.

proteins_api_variation

Protein sequence variations and disease variants.

proteins_api_proteomics

Proteomics data from various studies.

proteins_api_genome

Genome coordinate mappings.

data_manager

Query, analyze, and manage staged datasets.

Prompts

Interactive templates invoked by user choice

No prompts

Resources

Contextual data attached and managed by the client

No resources