QIngyuanfl/mcp-server-pubtator3
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This project provides an async Python server for interacting with the PubTator3 API, supporting tasks such as entity lookup, biomedical literature search, and text extraction from PubMed/PMC articles.
Tools
Functions exposed to the LLM to take actions
find_entity
Find the identifier(s) for a specific bioconcept using a free text query.
search_pubtator
Search for relevant PubMed/PMC articles in PubTator3 using flexible queries.
get_paper_text
Download and extract the text content from a PubMed or PMC article.
find_related_entities
Find entities related to a specific PubTator entity, filtered by relation type or entity type.
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client