pipethedev/PubMed-MCP-Server

3.1

If you are the rightful owner of PubMed-MCP-Server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

The PubMed MCP Server is a tool that connects AI assistants with PubMed's extensive biomedical literature database, enabling efficient search, retrieval, and analysis of scientific articles.

Tools

Functions exposed to the LLM to take actions

search_pubmed_key_words

Search for articles on PubMed using keywords.

search_pubmed_advanced

Perform an advanced search for articles on PubMed with multiple parameters.

get_pubmed_article_metadata

Fetch metadata for a PubMed article using its PMID.

download_pubmed_pdf

Attempt to download the full-text PDF for a PubMed article.

deep_paper_analysis

Perform a comprehensive analysis of a PubMed article.

Prompts

Interactive templates invoked by user choice

No prompts

Resources

Contextual data attached and managed by the client

No resources

Author

pipethedev

Claim Ownership

Verify you have write access to the repository

Repository

https://github.com/pipethedev/PubMed-MCP-Server

Homepage

pubmed-mcp-server.brimble.app

License

MIT License

Last publish date

2025-06-04

Last update date

2025-06-04

Server configs

in claude desktop

{
  "mcpServers": {
    "pubmed": {
      "command": "python",
      "args": ["-m", "pubmed-mcp-server"]
    }
  }
}

in claude desktop on windows

{
  "mcpServers": {
    "pubmed": {
      "command": "C:\\Users\\YOUR\\PATH\\miniconda3\\envs\\mcp_server\\python.exe",
      "args": [
        "D:\\code\\YOUR\\PATH\\PubMed-MCP-Server\\pubmed_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}

in cline

{
  "mcpServers": {
    "pubmed": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-pubmed/.venv/bin/activate && python /home/YOUR/PATH/pubmed-mcp-server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}