muwenbo/phenotype-analysis-toolset-mcp
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The Phenotype Analysis Toolset is an AI-powered system designed for advanced phenotype analysis, providing semantic search and structured workflows for mapping clinical symptoms to HPO terms.
Tools
Functions exposed to the LLM to take actions
get_genes_by_hpo
Get genes associated with HPO term
get_hpo_by_gene
Get HPO terms for specific gene
get_diseases_by_gene
Get diseases associated with gene
get_genes_by_disease
Get genes linked to disease
get_diseases_by_hpo
Get diseases for HPO term
get_hpo_by_disease
Get HPO terms for disease
get_hpo_name_by_id
Resolve HPO ID to human-readable name
search_hpo_for_symptom
Vector-based HPO term matching
chinese_phenotype_anaylysis_workflow
4-step Chinese clinical text analysis
english_phenotype_analysis_workflow
Streamlined English phenotype analysis
get_server_status
Database health, embeddings status, table statistics
get_api_key_configuration
VOYAGE_API_KEY setup and validation
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client