Augmented-Nature_Augmented-Nature-UniProt-MCP-Server

Augmented-Nature_Augmented-Nature-UniProt-MCP-Server

3.2

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The Unofficial UniProt MCP Server is a comprehensive Model Context Protocol server providing advanced access to the UniProt protein database, developed by Augmented Nature.

The Unofficial UniProt MCP Server is a robust platform designed to facilitate advanced bioinformatics research by providing seamless access to the UniProt protein database. Developed by Augmented Nature, this server integrates 26 specialized tools that enable AI assistants and MCP clients to conduct sophisticated protein research, comparative genomics, structural biology analysis, and systems biology investigations. By leveraging UniProt's REST API, the server offers a wide array of functionalities, including protein search, detailed protein information retrieval, sequence analysis, and evolutionary studies. The server is built with modern technologies, supporting both Node.js and Docker environments, ensuring ease of installation and deployment. It also includes comprehensive error handling and supports batch processing, making it an ideal choice for researchers and developers looking to integrate protein data into their applications.

Features

  • Core Protein Analysis: Tools for searching and retrieving detailed protein information.
  • Comparative & Evolutionary Analysis: Tools for protein comparison and evolutionary studies.
  • Structure & Function Analysis: Access to 3D structures and detailed domain analysis.
  • Biological Context Analysis: Integration with biological pathways and protein interactions.
  • Batch Processing & Advanced Search: Efficient processing of multiple accessions and complex queries.

Tools

  1. search_proteins

    Search the UniProt database for proteins by name, keyword, or organism.

  2. get_protein_info

    Get detailed information for a specific protein by UniProt accession.

  3. search_by_gene

    Search for proteins by gene name or symbol.

  4. get_protein_sequence

    Get the amino acid sequence for a protein.

  5. get_protein_features

    Get functional features and domains for a protein.