liftover-mcp
If you are the rightful owner of liftover-mcp and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.
This MCP server provides a programmatic interface to the Broad Institute's Liftover tool.
The Liftover MCP server offers a programmatic interface to the Broad Institute's Liftover tool, enabling users to convert genomic coordinates between different genome assemblies. This server is under active development, and its features and APIs may change without notice. It is built using FastMCP and requires dependencies such as uv, mcp[cli], fastmcp, beautifulsoup4, and selenium. The server's directory structure includes a main entry point, server.py, and a Python package, liftover_api, which contains the tool logic and parsers. Users can set up and run the server by adding it to their MCP server list and using the MCP Inspector for development purposes. The tool supports various input parameters for genomic coordinate conversion, including chromosome, position, start, end, reference allele, alternate allele, transcript ID, and HGVS notation.
Features
- Programmatic interface to Liftover tool
- Support for single position conversion
- Support for interval conversion
- Support for variant conversion
- Support for HGVS notation conversion
Tools
liftover
Tool for converting genomic coordinates between different genome assemblies.
