MCP_NIH_Reporter

jhalsey87/MCP_NIH_Reporter

3.2

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The NIH Reporter MCP Server provides programmatic access to the NIH Reporter API for retrieving information about NIH-funded research projects.

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NIH Reporter MCP Server

A Model Context Protocol (MCP) server that provides programmatic access to the NIH Reporter API for searching and retrieving information about NIH-funded research projects.

Overview

This MCP server allows AI assistants and other MCP clients to search for and retrieve detailed information about NIH-funded research grants, including:

  • Project details and funding information
  • Principal investigator information
  • Organization details
  • Project abstracts and public health relevance
  • Award amounts and dates
  • Study sections and review information

Features

Available Tools

  1. search_projects - Search for NIH projects using multiple criteria:

    • Fiscal years
    • NIH Institutes/Centers (IC codes)
    • Activity codes (R01, P01, etc.)
    • Organization names
    • Principal investigator names
    • Project numbers
    • Award amount ranges
    • Date ranges
    • Keywords in title/abstract

  2. get_project_details - Get comprehensive details about a specific project by project number or application ID

  3. search_recent_awards - Find recently awarded projects within a specified number of days

  4. search_by_investigator - Search for all projects by a specific principal investigator

  5. get_spending_categories - Get information about NIH spending categories

Prerequisites

  • Docker and Docker Compose installed
  • Basic understanding of MCP (Model Context Protocol)

Quick Start

1. Build the Docker Image

docker-compose build

2. Run the Server

docker-compose up

The server will start and listen for MCP requests via stdin/stdout.

3. Alternative: Build and Run with Docker Only

# Build the image
docker build -t nih-reporter-mcp .

# Run the container
docker run -i nih-reporter-mcp

Configuration for Claude Desktop

To use this MCP server with Claude Desktop, add it to your Claude configuration file:

On macOS/Linux: ~/Library/Application Support/Claude/claude_desktop_config.json

On Windows: %APPDATA%\Claude\claude_desktop_config.json

{
  "mcpServers": {
    "nih-reporter": {
      "command": "docker",
      "args": ["run", "-i", "--rm", "nih-reporter-mcp"]
    }
  }
}

After adding this configuration, restart Claude Desktop.

Usage Examples

Once connected to an MCP client (like Claude Desktop), you can use natural language to interact with the NIH Reporter API:

Example 1: Search for Recent Cancer Research

"Find recent NIH cancer research projects from the National Cancer Institute awarded in 2025"

This will use the search_projects tool with:

  • agencies: ["NCI"]
  • fiscal_years: [2025]

Example 2: Find Projects by Investigator

"Show me all NIH projects where John Smith is the principal investigator"

This will use the search_by_investigator tool.

Example 3: Get Project Details

"Get detailed information about project R01CA123456"

This will use the get_project_details tool.

Example 4: Search Recent Awards

"What are the newest NIH awards from the last 7 days?"

This will use the search_recent_awards tool.

Using with Azure OpenAI Responses API

You can integrate this MCP server with Azure OpenAI's Responses API using function calling. Here are snippets showing how to define the tools in different languages:

Python

from openai import AzureOpenAI
from azure.identity import DefaultAzureCredential, get_bearer_token_provider

# Configure Azure AD authentication
token_provider = get_bearer_token_provider(
    DefaultAzureCredential(),
    "https://cognitiveservices.azure.com/.default"
)

client = AzureOpenAI(
    base_url="https://YOUR-RESOURCE-NAME.openai.azure.com/openai/v1/",
    azure_ad_token_provider=token_provider,
    api_version="preview"
)

# Define NIH Reporter search tool
tools = [
    {
        "type": "function",
        "function": {
            "name": "search_projects",
            "description": "Search for NIH-funded research projects using multiple criteria including fiscal years, agencies, activity codes, and keywords",
            "parameters": {
                "type": "object",
                "properties": {
                    "fiscal_years": {
                        "type": "array",
                        "items": {"type": "integer"},
                        "description": "Fiscal years to search (e.g., [2024, 2025])"
                    },
                    "agencies": {
                        "type": "array",
                        "items": {"type": "string"},
                        "description": "NIH Institute/Center codes (e.g., ['NCI', 'NHLBI'])"
                    },
                    "activity_codes": {
                        "type": "array",
                        "items": {"type": "string"},
                        "description": "Grant activity codes (e.g., ['R01', 'K99'])"
                    },
                    "pi_names": {
                        "type": "array",
                        "items": {"type": "string"},
                        "description": "Principal investigator names"
                    },
                    "keywords": {
                        "type": "string",
                        "description": "Search keywords for project titles/abstracts"
                    }
                }
            }
        }
    }
]

response = client.responses.create(
    model="gpt-4.1",
    tools=tools,
    input="What recent NIH projects were targeted at early career researchers?"
)

print(response.output_text)

C#

using Azure.AI.OpenAI;
using Azure.Identity;

var credential = new DefaultAzureCredential();
var client = new AzureOpenAIClient(
    new Uri("https://YOUR-RESOURCE-NAME.openai.azure.com/"),
    credential
);

var tools = new[]
{
    new
    {
        type = "function",
        function = new
        {
            name = "search_projects",
            description = "Search for NIH-funded research projects using multiple criteria",
            parameters = new
            {
                type = "object",
                properties = new
                {
                    fiscal_years = new
                    {
                        type = "array",
                        items = new { type = "integer" },
                        description = "Fiscal years to search (e.g., [2024, 2025])"
                    },
                    agencies = new
                    {
                        type = "array",
                        items = new { type = "string" },
                        description = "NIH Institute/Center codes (e.g., ['NCI', 'NHLBI'])"
                    },
                    activity_codes = new
                    {
                        type = "array",
                        items = new { type = "string" },
                        description = "Grant activity codes (e.g., ['R01', 'K99'])"
                    },
                    keywords = new
                    {
                        type = "string",
                        description = "Search keywords for project titles/abstracts"
                    }
                }
            }
        }
    }
};

var response = await client.GetResponsesClient("gpt-4.1").CreateAsync(new()
{
    Tools = tools,
    Input = "What recent NIH projects were targeted at early career researchers?"
});

Console.WriteLine(response.Value.OutputText);

PHP

<?php
require 'vendor/autoload.php';

use OpenAI\Azure\Client;

$client = Client::factory()
    ->withBaseUri('https://YOUR-RESOURCE-NAME.openai.azure.com/openai/v1/')
    ->withAzureAdToken(getAzureAdToken())
    ->withApiVersion('preview')
    ->make();

$tools = [
    [
        'type' => 'function',
        'function' => [
            'name' => 'search_projects',
            'description' => 'Search for NIH-funded research projects using multiple criteria',
            'parameters' => [
                'type' => 'object',
                'properties' => [
                    'fiscal_years' => [
                        'type' => 'array',
                        'items' => ['type' => 'integer'],
                        'description' => 'Fiscal years to search'
                    ],
                    'agencies' => [
                        'type' => 'array',
                        'items' => ['type' => 'string'],
                        'description' => 'NIH Institute/Center codes'
                    ],
                    'activity_codes' => [
                        'type' => 'array',
                        'items' => ['type' => 'string'],
                        'description' => 'Grant activity codes'
                    ],
                    'keywords' => [
                        'type' => 'string',
                        'description' => 'Search keywords'
                    ]
                ]
            ]
        ]
    ]
];

$response = $client->responses()->create([
    'model' => 'gpt-4.1',
    'tools' => $tools,
    'input' => 'What recent NIH projects were targeted at early career researchers?'
]);

echo $response['output_text'];
?>

Integration Notes:

To connect these tools to your MCP server backend:

  1. Start the Docker container: docker run -i --rm nih-reporter-mcp
  2. When Azure OpenAI calls your function, intercept the function call
  3. Send the corresponding MCP protocol message via stdin to the Docker container
  4. Parse the JSON-RPC response from stdout
  5. Return the results to Azure OpenAI to generate the final response

Available Tools:

  • search_projects - Search with multiple criteria
  • get_project_details - Get details by project number
  • search_recent_awards - Find recent awards by days
  • search_by_investigator - Search by PI name
  • get_spending_categories - Get NIH spending categories

API Reference

NIH Institute/Center Codes

Common IC codes you can use in searches:

  • NCI - National Cancer Institute
  • NIDA - National Institute on Drug Abuse
  • NHLBI - National Heart, Lung, and Blood Institute
  • NIAID - National Institute of Allergy and Infectious Diseases
  • NIMH - National Institute of Mental Health
  • NIA - National Institute on Aging
  • NICHD - National Institute of Child Health and Human Development
  • NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases

See the documentation PDFs for the complete list.

Common Activity Codes

  • R01 - Research Project Grant
  • R21 - Exploratory/Developmental Research Grant
  • R03 - Small Research Grant
  • P01 - Research Program Project Grant
  • U01 - Research Project Cooperative Agreement
  • K01-K99 - Career Development Awards
  • T32 - Institutional Training Grant
  • F31-F33 - Individual Predoctoral/Postdoctoral Fellowship

Development

Project Structure

.
├── server.py           # Main MCP server implementation
├── requirements.txt    # Python dependencies
├── Dockerfile         # Docker container definition
├── docker-compose.yml # Docker Compose configuration
├── README.md          # This file
└── [PDF documentation files]

Local Development (Without Docker)

  1. Install dependencies:
pip install -r requirements.txt
  1. Run the server:
python server.py

Modifying the Server

The server code is in server.py. Key sections:

  • Tool definitions: list_tools() function
  • Tool handlers: Individual async functions for each tool
  • API integration: make_nih_api_request() function

After making changes, rebuild the Docker image:

docker-compose build

Troubleshooting

Server Not Responding

  1. Check if the container is running:
docker ps
  1. View logs:
docker-compose logs -f

API Errors

The NIH Reporter API may occasionally be slow or unavailable. The server includes a 30-second timeout for API requests.

Connection Issues

Ensure that:

  • Docker is running
  • The container has internet access to reach api.reporter.nih.gov
  • No firewall is blocking outbound HTTPS connections

Data Sources

This server uses the NIH Reporter API v2:

Limitations

  • Maximum 500 results per query (API limitation)
  • 30-second timeout per API request
  • Rate limiting may apply (enforced by NIH Reporter API)

License

This MCP server implementation is provided as-is for use with the NIH Reporter public API.

Contributing

Contributions are welcome! Please ensure:

  • Code follows Python best practices
  • All tools are properly documented
  • Docker container builds successfully
  • README is updated for new features

Support

For issues related to:

  • This MCP server: Check logs and troubleshooting section
  • NIH Reporter API: See official NIH Reporter documentation
  • MCP Protocol: See Model Context Protocol documentation

Version

Current Version: 1.0.0

Credits

Built using:

  • MCP SDK for Python
  • NIH Reporter API v2
  • Docker for containerization