jessicalh/chimerax-mcp
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The ChimeraX MCP Server connects AI assistants like Claude to UCSF ChimeraX, enabling molecular visualization and analysis through natural language.
Tools
Functions exposed to the LLM to take actions
run_command
Execute a ChimeraX command
open_structure
Open molecular structures from various sources
close_models
Close open models in ChimeraX
save_image
Save high-resolution images
color_structure
Color structures by chain or element
show_style
Change representation styles
measure_distance
Measure distances between atoms
align_structures
Align multiple structures
get_model_info
Retrieve information about models
show_surface
Display molecular surfaces
set_view
Adjust the camera view
select_residues
Select specific residues
find_clashes
Detect clashes between atoms
find_hbonds
Identify hydrogen bonds
get_sequence
Get the sequence of a model
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client