JackKuo666/PubTator-MCP-Server

3.3

If you are the rightful owner of PubTator-MCP-Server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

PubTator MCP Server provides AI assistants with access to the PubTator3 biomedical literature annotation system through the Model Context Protocol (MCP).

MCPHub score:3.34

Has a README

Github repo has a README.md.

Has a License

Github repo has license info.

Server can be inspected

Currently can not be tried on MCPHub.

Server schema can be extracted

Can not extract tools info from the README or server.

Online hosted on MCPHub

More deployment information is needed.

Has social accounts

Do not have any social accounts.

Claimed by the author or certified by MCPHub

If you are the author, claim authorship

Author

JackKuo666

Claim Ownership

Verify you have write access to the repository

Repository

https://github.com/JackKuo666/PubTator-MCP-Server

GitHub Stars

License

MIT License

Last publish date

2025-03-29

Last update date

2025-09-24

Server configs

in claude desktop

{
  "mcpServers": {
    "pubtator": {
      "command": "python",
      "args": ["-m", "pubtator-mcp-server"]
    }
  }
}

in claude desktop on windows

{
  "mcpServers": {
    "pubtator": {
      "command": "C:\\Users\\YOUR\\PATH\\miniconda3\\envs\\mcp_server\\python.exe",
      "args": [
        "D:\\code\\YOUR\\PATH\\PubTator-MCP-Server\\pubtator_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}

in cline

{
  "mcpServers": {
    "pubtator": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-pubtator/.venv/bin/activate && python /home/YOUR/PATH/pubtator_server.py"
      ],
      "env": {
        "MCP_TRANSPORT": "stdio"
      },
      "disabled": false,
      "autoApprove": []
    }
  }
}

in cline

{
  "mcpServers": {
    "pubtator": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-pubtator/.venv/bin/activate && python /home/YOUR/PATH/pubtator_server.py"
      ],
      "env": {
        "MCP_TRANSPORT": "tcp",
        "MCP_HOST": "127.0.0.1",
        "MCP_PORT": "8888"
      },
      "disabled": false,
      "autoApprove": []
    }
  }
}

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