scmcp
If you are the rightful owner of scmcp and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.
SCMCP is an MCP server designed for scRNA-Seq analysis using natural language.
SCMCP is a Model Context Protocol (MCP) server tailored for single-cell RNA sequencing (scRNA-Seq) analysis. It allows users to perform complex bioinformatics tasks using natural language commands. The server includes modules for input/output operations, preprocessing, analysis, and visualization of scRNA-Seq data. It is particularly useful for researchers and developers who want to integrate scRNA-Seq analysis capabilities into AI clients, plugins, or agent frameworks. SCMCP supports various functionalities such as data filtering, quality control, normalization, clustering, differential expression analysis, and cell-cell communication analysis. It is compatible with AI clients like Cherry Studio, plugins like Cline, and agent frameworks like Agno.
Features
- Natural language IO module for reading and writing scRNA-Seq data.
- Preprocessing module for filtering, quality control, normalization, and scaling.
- Tool module for clustering and differential expression analysis.
- Plotting module for creating visualizations like violin plots, heatmaps, and dotplots.
- Cell-cell communication analysis capabilities.
