scanpy-mcp
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Scanpy MCP server is designed for scRNA-Seq analysis using natural language.
The Scanpy MCP server is a model context protocol server tailored for single-cell RNA sequencing (scRNA-Seq) analysis using the Scanpy library. It allows users to perform complex bioinformatics tasks through natural language commands, making it accessible to a broader audience, including those who may not be familiar with programming. The server supports various modules such as IO for reading and writing data, preprocessing for data cleaning and normalization, tools for clustering and differential expression analysis, and plotting for visualizing results. It is particularly useful for agent developers and researchers who want to integrate Scanpy's functionalities into their applications or workflows.
Features
- Natural Language Processing: Enables scRNA-Seq analysis using natural language commands.
- IO Module: Supports reading and writing of scRNA-Seq data.
- Preprocessing Module: Offers filtering, quality control, normalization, and more.
- Tool Module: Provides clustering and differential expression analysis.
- Plotting Module: Includes visualization tools like violin plots and heatmaps.