bioruby/bioruby-mcp-server
If you are the rightful owner of bioruby-mcp-server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to dayong@mcphub.com.
The bioruby-mcp-server is a Model Context Protocol (MCP) server that provides access to BioRuby KEGG functionality, allowing AI assistants to query KEGG databases for biological pathways, compounds, enzymes, and other molecular information.
Tools
Functions exposed to the LLM to take actions
kegg_pathway_info
Get detailed information about a KEGG pathway.
kegg_compound_info
Get detailed information about a KEGG compound.
kegg_enzyme_info
Get detailed information about a KEGG enzyme.
kegg_search_compounds
Search for KEGG compounds by name or formula.
kegg_find_pathways_by_compound
Find pathways containing a specific compound.
kegg_list_organisms
List available organisms in KEGG.
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client