biocontext-ai/nucleotide_archive_mcp
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The RNA Dataset Search MCP Server is a specialized tool for accessing RNA sequencing datasets from the European Nucleotide Archive (ENA), optimized for human and mouse disease-related studies.
Tools
Functions exposed to the LLM to take actions
search_rna_studies
Unified search with preset filters or advanced library strategy/source filtering.
list_library_types
List all 50+ available library strategies and sources.
get_study_details
Get comprehensive metadata for a specific study (includes PubMed IDs).
find_studies_by_publication
Find studies associated with a PubMed ID.
search_studies_by_keywords
Flexible keyword search across study titles.
get_download_urls
Get FTP download URLs for all data files in a study.
generate_download_script
Generate bash scripts (wget/curl) for downloading data.
get_available_fields
Discover searchable and returnable fields for different data types.
get_result_types
List all available data types in ENA.
build_custom_query
Construct advanced queries with multiple field conditions.
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client