bio-mcp/bio-mcp-amber
3.2
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This document provides a structured summary of the MCP server for the AMBER molecular dynamics suite, which facilitates PDB relaxation and molecular dynamics simulations.
Tools
Functions exposed to the LLM to take actions
amber_relax_pdb
Perform energy minimization and relaxation of PDB structures using AMBER.
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client