Augmented-Nature/PDB-MCP-Server
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The PDB MCP Server is a Model Context Protocol server that provides access to the Protein Data Bank, offering tools and resources for exploring 3D structures of proteins, nucleic acids, and complex assemblies.
Tools
Functions exposed to the LLM to take actions
search_structures
Search PDB database for protein structures by keyword, protein name, or PDB ID.
get_structure_info
Get detailed information for a specific PDB structure.
download_structure
Download structure coordinates in various formats (PDB, mmCIF, mmTF, XML).
search_by_uniprot
Find PDB structures associated with a UniProt accession.
get_structure_quality
Get structure quality metrics and validation data.
Prompts
Interactive templates invoked by user choice
No prompts
Resources
Contextual data attached and managed by the client