BioOntology-MCP-Server

BioOntology-MCP-Server

3.3

If you are the rightful owner of BioOntology-MCP-Server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

The Unofficial BioOntology MCP Server provides access to the BioOntology API for exploring over 1,200 biological ontologies.

The Unofficial BioOntology MCP Server is a robust and production-ready server that facilitates comprehensive access to the BioOntology API. It is designed to support the exploration, annotation, and analysis of a vast array of biological ontologies, totaling over 1,200. This server is built to handle complex queries and provide detailed information about ontology terms, properties, and classes. It also offers advanced text analysis capabilities, allowing users to annotate text and receive ontology recommendations. With a focus on performance and reliability, the server ensures efficient API request handling and robust error management. It is fully compliant with the Model Context Protocol (MCP), making it compatible with various MCP-enabled clients and applications. The server is ideal for researchers, developers, and organizations looking to integrate ontology data into their workflows seamlessly.

Features

  • Search across ontology terms with advanced filtering options.
  • Analyze text and identify relevant ontology terms.
  • Get detailed information about specific ontologies and classes.
  • Receive ontology recommendations based on text or keywords.
  • Access usage statistics and quality metrics for ontologies.

Tools

  1. search_terms

    Search across ontology terms with advanced filtering options.

  2. annotate_text

    Analyze text and identify relevant ontology terms.

  3. recommend_ontologies

    Get ontology recommendations for text or keywords.

  4. batch_annotate

    Process multiple texts for annotation efficiently.