AlphaFold-MCP-Server

AlphaFold-MCP-Server

3.5

If you are the rightful owner of AlphaFold-MCP-Server and would like to certify it and/or have it hosted online, please leave a comment on the right or send an email to henry@mcphub.com.

The AlphaFold MCP Server provides access to the AlphaFold Protein Structure Database, offering tools for protein structure prediction analysis.

The AlphaFold MCP Server is a comprehensive Model Context Protocol (MCP) server designed to facilitate seamless integration with AlphaFold's extensive collection of protein structure predictions. It offers a rich set of tools and resources for structure retrieval, confidence analysis, batch processing, and visualization preparation. This server is ideal for researchers, bioinformaticians, and structural biologists who work with predicted protein structures, providing them with the necessary tools to retrieve, analyze, and visualize protein structures efficiently. The server supports multiple formats for downloads, offers detailed confidence and quality analysis, and allows for batch processing and comparative analysis of protein structures. Additionally, it integrates with popular visualization tools like PyMOL and ChimeraX, making it a versatile tool for protein structure research.

Features

  • Structure Retrieval: Access AlphaFold predictions by UniProt ID with support for multiple formats.
  • Confidence & Quality Analysis: Detailed per-residue confidence scores and overall prediction reliability assessment.
  • Batch Processing: Efficiently process and download multiple protein structures simultaneously.
  • Comparative Analysis: Side-by-side analysis and similarity search for multiple proteins.
  • Visualization Integration: Export data for PyMOL and ChimeraX with confidence coloring options.

Tools

  1. get_structure

    Retrieve AlphaFold structure prediction for a specific UniProt ID.

  2. download_structure

    Download AlphaFold structure file in specified format.

  3. check_availability

    Check if AlphaFold structure prediction is available for a UniProt ID.

  4. search_structures

    Search for available AlphaFold structures by protein name or gene.

  5. get_confidence_scores

    Get per-residue confidence scores for a structure prediction.